hdf5.hh

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#ifndef __BASE_STATS_HDF5_HH__
#define __BASE_STATS_HDF5_HH__
 
#include <H5Cpp.h>
 
#include <memory>
#include <stack>
#include <string>
#include <vector>
 
#include "base/output.hh"
#include "base/stats/output.hh"
#include "base/stats/types.hh"
 
namespace Stats {
 
class Hdf5 : public Output
{
  public:
    Hdf5(const std::string &file, unsigned chunking, bool desc, bool formulas);
 
    ~Hdf5();
 
    Hdf5() = delete;
    Hdf5(const Hdf5 &other) = delete;
 
  public: // Output interface
    void begin() override;
    void end() override;
    bool valid() const override;
 
    void beginGroup(const char *name) override;
    void endGroup() override;
 
    void visit(const ScalarInfo &info) override;
    void visit(const VectorInfo &info) override;
    void visit(const DistInfo &info) override;
    void visit(const VectorDistInfo &info) override;
    void visit(const Vector2dInfo &info) override;
    void visit(const FormulaInfo &info) override;
    void visit(const SparseHistInfo &info) override;
 
  protected:
    H5::DataSet appendVectorInfo(const VectorInfo &info);
 
    H5::DataSet appendStat(const Info &info, int rank, hsize_t *dims,
                           const double *data);
 
    void addMetaData(H5::DataSet &loc, const char *name,
                     const std::vector<const char *> &values);
 
    void addMetaData(H5::DataSet &loc, const char *name,
                     const std::vector<std::string> &values);
 
    void addMetaData(H5::DataSet &loc, const char *name,
                     const std::string &value);
 
    void addMetaData(H5::DataSet &loc, const char *name, double value);
 
  protected:
    const std::string fname;
    const hsize_t timeChunk;
    const bool enableDescriptions;
    const bool enableFormula;
 
    std::stack<H5::Group> path;
 
    unsigned dumpCount;
    H5::H5File h5File;
};
 
std::unique_ptr<Output> initHDF5(
    const std::string &filename,unsigned chunking = 10,
    bool desc = true, bool formulas = true);
 
} // namespace Stats
 
#endif // __BASE_STATS_HDF5_HH__